Bioconductor Gage package

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3.7k

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gage gage package pathview rna-seq

updated 2.2 years ago by Helen • 0 • written 6.2 years ago by tarun2 • 0

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2.8k

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gage package error

updated 6.0 years ago by James W. MacDonald 65k • written 6.0 years ago by Miskey, Csaba ▴ 20

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1.7k

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kegg geneset genelist gage package

updated 6.7 years ago by Gordon Smyth 50k • written 6.7 years ago by sup230 ▴ 30

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1.6k

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gage gage package

updated 7.5 years ago by Luo Weijun ★ 1.6k • written 7.6 years ago by Michael • 0

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1.5k

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gage package deseq2

6.8 years ago sup230 ▴ 30

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1.4k

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R gage package rnaseq pathview

7.7 years ago joanito.liberti • 0

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gage gage package gene expression matrix gene set analysis

5.8 years ago atakanekiz ▴ 30

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936

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gage package path.ids RNA-Seq

7.8 years ago rl1385 • 0

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913

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t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment

7.8 years ago smt8n • 0

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899

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gage package gage

5.8 years ago melkile26 • 0

10 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Comment: Help with running egsea() by James W. MacDonald 65k

I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.

Votes

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

Awards • All

Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k